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33. Sauthier, M. L.; Carroll, R. L.; McConnell, W.
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35. Franzen, S.; Miskowski,
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36. Franzen, S.; Bailey, J.;
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37. Franzen, S. “The
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38.
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39. Pop, C.; Chen, Y.-R.; Smith, B.; Bose, K.; Bobay, B.; Tripathy, A.; Franzen, S.; Clark, A. C. “Removal of the Pro-domain Has Little Effect on the Procaspase-3 Dimer” Biochemistry, 2001, 40, 14224-14235
40. Novak, J. P.; Knickerson, C.; Franzen, S.; Feldheim, D. L. “Purification of Molecularly Bridged Metal Nanoparticle Arrays by Centrifugation and Size-exclusion chromatography” Anal. Chem. 2001, 73, 5758-5761
41. Franzen, S.; Stanley, R. J. “A Theoretical Explanation for Quantum Yield Failure in Bacterial Photosynthetic Reaction Centers” Chemical Physics, 2002, 276, 115-127
42. Franzen, S.; Wallace-Williams, S. E.; Shreve A. P. “The heme charge transfer band III is vibronically coupled to the Soret band” J. Am. Chem. Soc., 2002, 124, 7146-7155
43. Brewer, S. H.; Franzen, S. “Optical properties of indium tin oxide and fluorine-doped tin oxide surfaces: correlation of plasmon frequency, reflectivity and skin depth with conductivity” Alloys and Compounds, 2002, 338, 73-79
44. Franzen, S. “Carbonmonoxy
Rebinding Kinetics in H93G Myoglobin: Geminate CO recombination depends on
proximal ligation states and ligand escape does not” J. Phys. Chem., 2002, 106, 4533-4542
45. Brewer, S. H.; Lappi, S.; Anthireya, S.;
Drapcho, D.; Franzen, S. “Detection of DNA Hybridization on Gold Surfaces
by Polarization Modulation Infrared Reflection Absorption Spectroscopy”
Langmuir, 2002, 18, 4460-4464
46. Brewer, S. H.; Brown, D. A.; Franzen, S. “Formation of thiolate and phosphonate adlayers on indium tin oxide: Optical and electronic characterization of the bonding” Langmuir, 2002, 18, 6857-6865
47. Franzen, S., Folmer, J. W.C.; Glomm, W.R.; O'Neal, R. “Optical properties of dye molecules adsorbed on single gold and silver nanoparticles” J. Phys. Chem. 2002, 106, 6533-6540
48. Smith, B. M.; Franzen, S. “Single-Pass Attenuated Total Reflection Fourier Transform Infrared Spectroscopy for the Analysis of Proteins in H2O Solution” Anal. Chem. 2002, 74, 4076-4080
49. Smith, B. M.; Franzen, S. “Single-Pass Attenuated Total Reflection Fourier Transform Infrared Spectroscopy for the Prediction of Secondary Structure” Anal. Chem. 2002, 74, 3386-3391
50.Franzen S. “A Perimeter Model for the
Magnetic Circular Dichroism Spectrum of Deoxy Ferrous Heme in Myoglobin” J. Phys. Chem. B 2002, 106, 10482-10491
51. Franzen, S.; Brown, D. A.; Petersen, E.; Friedman, J.; Thomas, M. R.; Boxer, S. G. “Proximal Ligand Motions in H93G Myoglobin” Eur. J. Biochem. 2002, 269, 4879-4886
52. Franzen, S.; “An electrostatic model for the frequency shifts in the carbonmonoxy stretching band of myoglobin: correlation of hydrogen bonding and the Stark tuning rate” J. Am. Chem. Soc. 2002, 124, 13271-13281
53. Franzen, S.; Fritsch, K.; Brewer, S. “Experimental observation of anharmonic coupling of the heme-doming and iron-ligand out-of-plane vibrational modes confirmed by Density Functional Theory” J. Phys. Chem. B 2002, 106, 11641-11646
54. Franzen, S.; “Spin-dependent mechanism for diatomic ligand binding to heme” Proc. Natl. Acad. Sci. 2002, 99, 16754-16759
55. Brewer, S. H.; Franzen, S. “Observation of the plasmon band in indium tin oxide thin films by reflectance FTIR spectroscopy” J. Phys. Chem. B 2002, 106, 12986-12992
56. Lappi, S. E.; Collier, W.; Franzen, S. “Density functional analysis of anharmonic contributions to adenine matrix isolation spectra” J. Phys. Chem. B 2002, 106, 11446-11455
57. Tkachencko, A.; Coleman, D.; Xie, H.; Ryan, J.; Andersen, M.; Glomm, W. R.; Franzen, S.; Feldheim, D. L, “Multifunctional Nanoparticle-Peptide Complexes for Nuclear Targeting” J. Am. Chem. Soc. 2003, 125, 4700-4701
58. Franzen, S.; Folmer, J. W. C. “Modulated Differential Scanning Calorimetry in the undergraduate Physical Chemistry laboratory.” J. Chem. Ed. 2003, 80, 813-818
59. Brewer, S. H., Franzen, S. "On the mechanism of the vibrational Stark effect." J. Chem. Phys. 2003, 119, 851-858
60. Maness, S,; Gibbs, A.; Dyer, R. B.; Franzen S.
"Nanosecond Measurements of Early Events in the Cyclic Beta-sheet Structures" Biophys. J. 2003, 84, 3874-3882
61. Franzen, S.; Shultz, D. A. "A New Paradigm for Design of High-Spin Organic Molecules: The Mechanism of Spin-dependent Delocalization in Exchange-Coupled Mixed-Valent Organic Species" J. Phys. Chem. A 2003, 107, 4292-4299
62. Franzen, S."Use of Periodic Boundary Conditions to Calculate Accurate Beta-Sheet Frequencies Using Density Function Theory" J. Phys. Chem. A 2003, 107, 9898-9902
63. Franzen, S.; Ni, W.; Wang, B. "A Study of the Mechanism of Electron Transfer Quenching by Boron-Nitrogen Adducts in Fluorescent Sensors"J. Phys. Chem. B, 2003, 107, 12942-12948
64. Franzen, S."Density functional calculation of a potential energy surface alkane thiols on Au(111) as function of alkane chain length" Chem. Phys. Lett., 2003, 381, 315-321
65. Xie, H.; Tkachenko, A. G.; Glomm, W. R.; Ryan, J. A.; Brennaman, M. K.; Papanikolas, J.; Franzen, S.; Feldheim, D. L. "Critical flocculation concentrations, binding isotherms, and ligand exchange properties of peptide-modified gold nanoparticles studied by UV-visible, fluorescence, and time-correlated single photon counting spectroscopies" Anal. Chem. 2003, 75, 5797-5805
66. Lowe, L. B.; Brewer, S. H.; Kraemer, S.; Fuierer R. R.; Qian G.; Agbasi-Porter, C. O.; Moses, S.; Franzen, S.; Feldheim, D. L. “Laser-induced Temperature Jump Electrochemistry on Gold Nanoparticle-Coated Electrodes” J. Am. Chem. Soc. 2003, 125, 14258-14259
67. Brewer, S. H.; Franzen, S. "Calculation of the Optical and Electronic Properties of Indium Tin Oxide by Density Functional Theory" Chem. Phys. 2004, 300, 285-293
68. Shapkina, T.; Lappi, S.; Franzen, S.; Wollenzien, P. "Efficiency and pattern of UV pulse laser-induced RNA-RNA cross-linking in the ribosome" Nucl. Acids Res. 2004, 32, 1518-1526
69. Lappi, S. E.; Franzen, S. "Eigenvector mapping: a method for discerning solvent effects on vibrational spectra" Spectrochim. Acta A, 2004, 60, 357-370
70. Smith, B. M.; Lappi, S. E.; Dembowy, S.; Belyea, J.; Brewer, S.H.; Franzen, S. "Surface Modification of a Germanium Attenuated TOtal Reflectance Elements" Langmuir 2004, 20, 1184-1188
71. Polack, T.; Ogilvie, J.; Franzen, S.; Vos, M. H.; Joffre, M.; Martin, J.-L.; Alexandrou, A. "The CO vibration as a probe of ligand dissociation and transfer in myoglobin" Phys. Rev. 2004, 93, Art. No. 018102
72. Brewer, S.H.; Allen, A. M.; Lappi, S. E.; Chasse, T. L.; Briggman, K. A.; Gorman, C.; Franzen, S. "Infrared Detection of Phenylboronic Acid Terminated Alkane Thiol Monolayers on Gold Surfaces" Langmuir 2004, 20, 5512-5520
73. Lappi, S. E.; Smith, B.; Franzen, S. "Infrared spectra of H216O, H218O and D2O in the liquid phase by single-pass attenuated total internal reflection spectroscopy" Spectrochim. Acta A 2004, 60, 2611-2619
74. Moses, S.; Brewer, S. H.; Lappi, S. E.; Gilvey, L. B. G.; Sauthier, M.; Tenent, R. C.; Feldheim, D. L.; Franzen, S. "Characterization of Single and Double Stranded DNA on Gold Surfaces" Langmuir 2004, 20, 11134-11140
75. Dyer R.B.; Maness S.J.; Peterson E.S.; Franzen, S.; Fesinmeyer, R.M.; Andersen N.H. "The mechanism of beta-hairpin formation " Biochemistry 2004, 43, 11560-11566
76. Ni, W.J.; Kaur, G.; Springsteen, G.; Wang, B.H.; Franzen, S. "Regulating the fluorescence intensity of an anthracene boronic acid system: a B-N bond or a hydrolysis mechanism?" Bioorganic Chemistry, 2004, 32, 571-581
77. Tkachenko, A.; Xie, H.; Coleman, D.; Ryan, J.; Anderson, M.; Glomm, W.; Belyea, J.; Franzen, S.; Feldheim, D. L. "Cellular Trajectories of Peptide-modified Gold Particle Complexes: Comparison of Nuclear Localization Signals" Bioconjugate Chemistry 2004, 15, 482
78. Hung, F. R.; Franzen, S.; Gubbins, K. E. "A graduate course in multi-scale modeling of soft matter" J. Chem. Eng. Ed. 2004, 38, 242-249
79. Nienhaus, K.; Olson, J. S.; Franzen, S.; Nienhaus, G. U. "The Origin of Stark Splitting in the initial photodissociated state of MbCO" J. Am. Chem. Soc. 2005, 127, 40-41
80. Glomm, W. R.; Moses, S.; Brennaman, M. K.; Papanikolas, J.; Franzen, S. "Detection of surface adsorption of Ru(II) and Os(II) Polypyridyl Complexes on Gold and Silver Nanoparticles by Single Photon Counting Emission Measurements" J. Phys. Chem. B 2005, 109, 804-810
81. Masternak, A.; Wenska, G.; Milecki, J.; Skalski, B.; Franzen, S. "Solvatochromism of a Novel Betaine Derived from Purine" J. Phys. Chem. A 2005, 109, 759-766
82. Bin-Salamon, S.; Brewer, S. H.; Franzen, S.; Feldheim, D. L., Lappi, S.; Shultz, D. A. "Supramolecule control of valence-tautomeric equlibrium on nanometer-scale gold clusters" J. Am. Chem. Soc. 2005 127, 5328-5329
83. Dyer, R.B; Maness, S.J.; Franzen, S.; Fesinmeyer, R.M.; Olsen, K.A.; Andersen, N.H. "Hairpin folding dynamics: The cold-denatured state is predisposed for rapid folding" Biochemistry 2005, 30, 10406-10415
84. Brewer, S.H.; Wicaksana, D.; Maria, J.-P.; Kingon A. I.; Franzen, S. "Investigation of the Electrical and Optical Properties of Iridium Oxide by Reflectance FTIR Spectroscopy and Density Functional Theory Calculations" Chemical Physics, 2005, 313, 25-31
85. Brewer, S.H.; Glomm, W.R.; Johnson, M.C.; Knag, M. K.; Franzen, S. "Probing BSA Binding to Citrate Coated Gold Nanoparticles and Surfaces" Langmuir, 2005, 21, 9303-9307
86. Brewer, S.H.; Vu, D.M.; Tang, T.; Franzen, S.; Raleigh, D.P.; Dyer, R. B. "Effect of modulating unfolded state structure on the folding kinetics of the villin headpiece subdomain" Proc. Natl. Acad. Sci., 2005, 102, 16662-16667
87. Belyea, J.; Gilvey, L. Godek, M.; Sit, T.; Lommel, S.; Franzen, S. "Cloning, expression, purification and functional tests of a histidine-tagged dehaloperoxidase enzyme from Amphitrite ornata" Biochemistry 2005, 44, 15637-15644
88. Tkachenko, A.; Xie, H.; Franzen, S.; Feldheim, D.L. "Assembly and characterization of biomoledule-gold nanoparticle conjugates and their use in intracellular imaging" in Methods of Molecular Biology (Totowa, NJ, U.S.), 2005, 303, 85-99
89. Negrerie, M.; Kruglik, S.G.; Lambry, J.C.; Vos, M.H.; Martin, J.L.; Franzen, S.; "Role of heme iron coordination and protein structure in the dynamics and geminate rebinding of nitric oxide to the H93G myoglobin mutant - Implications for nitric oxide sensors" J. Biol. Chem. 2006, 281, 10389-10398
90. Loo, L.; Guenther, R. H.; Basnayake, V.R.; Lommel, S.A.; Franzen S. "Controlled encapsidation of gold nanoparticles by a viral protein shell" J. Am. Chem. Soc., 2006, 128, 4502-4503
91. Cerruti, M.; Sauthier, N.; Leonard, D.; Liu, D.; Duscher, G.; Franzen, S.; Feldheim, D.; "Gold and Silica-Coated Gold Nanoparticles as Thermographic Labels for DNA Detection"Anal. Chem. 2006, 78, 3282-3288
92. Bin-Salamon, S.; Brewer, S.H.; Depperman E,C,; Franzen, S.; Kampf , J.W.; Kirk, M.L.; Kumar, R.K.; Lappi, S.; Peariso, K.; Preuss, K.E.; Shultz, D.A. "Testing bridge-mediated differences in dinuclear valence tautomeric behavior" Inorg. Chem. 2006, 45, 4461-4467
93. Nienhaus, K.; Deng, P.; J. Belyea, J.; Franzen, S.; Nienhaus, U. "Spectroscopic Study of Substrate Binding to the Carbonmonoxy Form of Dehaloperoxidase from Amphitrite ornata " J. Phys. Chem. B 2006, 110, 13264-13276
94. Franzen, S.; Jasaitis, A.; Belyea, J.; Brewer, S. H.; Casey, R.; MacFarlane IV, A. W.; Stanley, R.; Vos, M. H.; Martin, J.-L. "NO-heme Geminate Recombination Dynamics in Dehaloperoxidase" J. Phys. Chem. B 2006, 45, 9085-9094
95. Franzen, S.; Belya, J.; Davis, M. F.; Gilvey, L.B.; Chaudhary, C.; Sit, T. L.: Lommel, S. A. "Proximal cavity, distal histidine and substrate hydrogen-bonding mutations modulate the activity of Amphitrite ornata dehaloperoxidase" Biochemistry, 2006, 45, 9085-9095
96. Rhodes C.; Franzen, S.; Maria, J-P.; Losego, M.; Leonard, D. N. ; Laughlin, B. ; Duscher G.; Weibel, S.; "Surface Plasmon Resonance in Conducting Metal Oxides" J. Appl. Phys. 2006, 100, Art. No. 054905
97. Agbasi-Porter C..; Ryman-Rasmussen, J.; Franzen, S.; Feldheim, D.L. "Transcription inhibition using oligonucleotide-modified gold nanoparticles" Bioconj. Chem. 2006, 17, 1178-1183
98. Belyea, J.; Belyea, C.M.; Lappi, S.E.; Franzen, S. "Resonance Raman study of ferric heme adducts of dehaloperoxidase from Amphitrite ornata" Biochemistry 2006, 45, 14275-14284
99. Franzen, S.; Gilvey, L.B.; Belyea, J. "The pH dependence of the activity of dehaloperoxidase from Amphitrite ornata" Biochimica et Biophysica Acta: Protein Structure and Molecular Enzymology 2007, 1774, 121-130
100. Kaufman, E.D.; Belyea, J.; Johnson, M.C.; Nicholson, Z.M.; Ricks, J.L.; Shah, P.K.; Bayless, M.; Pettersson, T.; Feldoto, Z.; Blomberg, E.; Claesson, P. "Probing protein adsorption onto mercaptoundecanoic acid stabilized gold nanoparticles and surfaces by quartz crystal microbalance and zeta-potential measurements." Langmuir 2007, 23, 6053-6062
101. Liu, Y.L.; Shipton, M.K.; Ryan, J.; Kaufman, E.D.; Franzen, S.; Feldheim,
D.L. "Synthesis, stability, and cellular internalization of gold nanoparticles containing mixed peptide-poly(ethylene glycol) monolayers". Analytical Chemistry 2007, 79, 2221-2229
102. Serrano, V.S.; Chen, Z.; Davis, M. F.; Franzen, S. "X-ray Crystal Structural Analysis of the Binding Site in the Ferric and Oxyferrous Forms of the Recombinant Heme Dehaloperoxidase Cloned from Amphitrite ornata" Acta Cryst. D 2007, 63, 1094-1101
103. Moses, S.; Brewer, S.H.; Kraemer, S.; Fuierer, R.R.; Lowe, L.B.; Agbasi, D.; Sauthier, M.; Franzen, S. "Detection of DNA Hybridization on Indium Tin Oxide Surfaces" Sensors and Actuators B, 2007, 125, 574-580
104. V.S. Serrano; Liu, W.; Franzen, S. "An Infrared Spectroscopic Study of the Conformational Transition of Elastin-like Polypeptides" Biophys. J. 2007, 93, 2427-2435
105. Loo, L.; Guenther, R. N.; Lommel, S. A.; Franzen, S. "Encapsidation of nanoparticles by Red clover necrotic mosaic virus" J. Am. Chem. Soc. 2007, 93, 2427-2435
106. Cerruti, M.; Rhodes, C,; Losego, M; Efremenko, A.; Maria, J.-P.; Fischer, D.; Franzen, S.; Genzer, J. "Influence of indium-tin oxide surface structure on the ordering and coverage of carboxylic acid and thiol monolayers " J. Phys. D. - Appl. Phys. 2007, 40, 4212-4221
107. Franzen S.; Cerruti, M.; Leonard, D.; Duscher, G. "The Role of Selection Pressure in RNA-mediated Evolutionary Materials Synthesis" J. Am. Chem. Soc. ASAP
108. Crissy L. Rhodes, C.L.; Lappi, S.; Fischer, D.; Sambasivan, S.; Franzen, S.; Jan Genzer, J. "Characterization of Monolayer Formation on Aluminum-doped Zinc Oxide Thin Films" Langmuir, in Press
109. Loo, L.; Guenther, R. H.; Lommel, S. A.; Franzen, S. "Infusion of dye molecules into Red clover necrotic mosaic virus" Chem. Comm. In Press
110. Ryan, J. A.; Overton, K.W.; Speight, M.E.; Oldenburg, C.N.; Loo, L.; Robarge, W.; Franzen, S.; Feldheim, D. L. "Cellular Uptake of Gold Nanoparticles Passivated with BSA-SV40 Large T Antigen Conjugates" Anal. Chem. In Press
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