Publications
1. Boxer; S. G. Goldstein, R.
A.; Franzen, S. ¨The use of magnetic and electric fields to probe electron
transfer reactions¨ in Photoinduced
Electron Transfer Fox, M. A.; Chanon, M.
Eds.; Elsevier Press; New York 1988; Vol. B, pp. 163-215
2. Boxer; S. G. Lockhart, D.
J.; Franzen, S. ¨Electric field effects on electron transfer reactions in
isotropic systems¨ in Photochemical Energy Conversion J. R. Norris Jr.; Meisel, D. Eds.; Elsevier Press; New York 1989;
pp. 196-210
3.
Franzen, S; Goldstein, R. F.; Boxer, S. G. ¨Electric field modulation of
electron transfer rates: charge recombination in photosynthetic reaction
centers¨ J. Phys. Chem. 1990, 94, 5135-5149
4. Lockhart, D. J.; Hammes, S.
L.; Franzen S.; Boxer, S. G. ¨Electric field effect on emission lineshapes
when electron transfer competes with emission: an example from photosynthetic
reaction centers¨ J. Phys. Chem. 1991,
95, 2217-2226
5. Hasegawa, T.; Franzen, S.;
Lambright, D.; Oh, D.; Balasubramanian, S.; Hedman, B.; Hodgson, K.
¨Inclusion of a small molecule in a big cage: preparation and structure of
catena-(catena-a,w-diaminooctane-m-cadmium tetracyanonickelate)-toluene¨ Inorg.
Chem. 1991, 30, 1441-1444
6. Shreve,
A.; Cherepy, N.; Franzen, S.; Boxer, S. G.; Mathies, R. A. ¨Rapid flow
resonance Raman in bacterial photosynthetic reaction centers¨ Proc. Natl. Acad. Sci. 1991, 88,
11207-11211
7. Boxer, S. G.; Franzen, S.;
Lao, K.; Lockhart, D. J; Stanley, R.; Steffen, M.; Stocker, J. W. ¨Electric-field
effects on the quantum yield and kinetics of fluorescence and transient
intermediates in bacterial photosynthetic reaction centers¨ in The
Photosynthetic Bacterial Reaction Center II 1992 Breton, J.; Vermeglio,
A; Eds. NATO ASI Series vol. 237 Plenum Press
8. Franzen, S.; Lao, K-Q.;
Boxer, S. G. ¨Electric field effects
on kinetics of electron transfer reactions: connection between experiment and
theory¨ Chem. Phys. Lett. 1992, 197,
380-388
9.
Franzen, S. and Boxer, S. G. ¨Temperature dependence of the electric
field modulation of electron transfer rates: charge recombination in
photosynthetic reaction centers¨ J.
Phys. Chem. 1993, 97, 6304-6318
10. Franzen, S; Goldstein, R. F.;
Boxer, S. G. ¨Distance dependence of
electron-transfer reactions in organized systems: the role of superexchange and
non-Condon effects in photosynthetic reaction centers¨ J. Phys. Chem. 1993, 97,
3040-3053
11. Goldstein, R. F.; Franzen,
S.; Bialek W. ¨A non-perturbative
approach to non-Condon effects: must a non-adiabatic transition always occur at
the potential surface crossing?¨ J.
Phys. Chem. 1993, 97, 11168-11174
12. Lao, K-Q.; Franzen, S.;
Stanley, R. J.; Lambright, D. G.; Boxer, S. G. ¨Effects of applied electric
fields on the quantum yields of the initial electron transfer steps in
bacterial photosynthesis: I. Quantum yield failure¨ J. Phys. Chem. 1993, 97,
13165-13171
13. Cherepy, N.; Shreve, A.;
Franzen, S.; Boxer, S. G.; Mathies, R. A. ¨A comparison of the excitation
profile of the bacteriochlorophyll monomer and dimer in the bacterial
photosynthetic reaction center¨ J. Phys. Chem. 1994, 98,
6023-6029
14. Franzen, S.; Lambry,
J.-C.; Bohn, B.; Poyart, C.; Martin, J-L. ¨Direct evidence for heme-iron
doming as the primary event in the quaternary structure change of hemoglobin¨
Nature Structural Biology 1994, 1, 230-233
15. Franzen,
S.; Bohn, B.; Poyart, C.; Martin, J-L. ¨Evidence for sub-picosecond heme
doming in hemoglobin and myoglobin: A time-resolved resonance Raman comparison
of carbonmonoxy and deoxy species" Biochemistry 1995, 34, 1224-1237
16. Franzen, S.;
Bohn, B.; Poyart, C.; DePillis, G. D; Boxer, S. G.; Martin, J-L.
¨Functional Aspects of Ultra-Rapid heme Doming in Hemoglobin, Myoglobin, and
the Myoglobin Mutant H93G¨ J. Biol. Chem. 1995, 270, 1718-1720
17. Franzen,
S.; Martin, J-L. ¨Design and Regulation of Efficient Photoinduced Electron
Transfer in Photosynthetic and Macromolecular Model Systems" Ann. Rev.
Phys. Chem., 1995, 46, 453-487
18. Lao, K-Q.; Franzen, S.;
Stanley, R. J.; Lambright, D. G.; Boxer, S. G. ¨Effects of applied electric
fields on the quantum yields of the initial electron transfer steps in
bacterial photosynthesis: II. Angle dependence of quantum yield failure¨ Chem. Phys. 1995, 197, 259-275
19. LeClerc, E.; Franzen, S.;
Bohn, B.; Marden, M.; Poyart, C.; Martin, J-L. ¨A Time-resolved Study of CO
Recombination Dynamics in a Calmodulin-Heme Complex¨ Biochim. Biophys. Acta 1996, 1293,
140-146
20.
Decatur, S.; Franzen, S.; Dyer, R. B.; Woodruff, W. H.; Boxer, S. G.
"Trans Effects in Nitric Oxide Binding to Myoglobin Cavity Mutant
H93G" Biochemistry 1996, 35,
4939-4944
21. Franzen,
S.; Boxer, S. G. "On the Origin of Heme Absorption Band Shifts and
Associated Protein Structural Relaxation in Myoglobin following Flash
Photolysis" J. Biol. Chem., 1997, 272, 9655-9660
22. Collman, J. P., Harford, S. T., Franzen,
S., Eberspacher, T. A., Shoemaker, R. K., Woodruff, W. H.
"Spectroscopic Comparisons of MoW(Porphyrin)2 Heterodimers with
Homologous Mo2 and W2
Quadruple Bonds: A Dynamic NMR and Resonance Raman Study" J. Am. Chem. Soc., 1998, 120,
1456-1465
23. Franzen, S., Dyer, R. B., Woodruff, W. H.,
Roach, M. R., Chen. Y.-P., Dawson, J. H.
"The Unusual Reactivities of Amphitrite ornata and Notomastus
Lobatus Do Not Result from Strong Hydrogen Bonding of their Proximal Histidine
Heme Iron Ligands"
J. Am. Chem. Soc., 1998, 120, 4658-4661
24. Miskowski, V. M., Franzen, S., Shreve, A. P.,
Wallace-Williams, S. E., Barr, M., Woodruff, W. H. "Bond-Stretch
Isomers of a Mixed-Valence Binuclear Cu Complex" Inorg. Chem. 1999,
38,2546-2547
25. Collman, J. P.; Harford, S. T.; Franzen, S.;
Marchon, J.-C.; Maldivi, P.;
Woodruff, W.
H. “Resonance Raman, X-Ray
Crystallographic and Magnetic Susceptibility Studies of Metal-Metal Bonded MoRu
and WOs Porphyrin Dimers: 1. Evidence For An Unusual MO Diagram” Inorg. Chem., 1999,
38, 2085-2092
26. Franzen,
S.; Moore, L. J.; Woodruff, W. H.; Boxer, S. G. "Stark Effect
Spectroscopy of the Heme Charge Transfer Bands of Deoxymyoglobin" J. Phys.
Chem. B, 1999, 103, 3070-3072
27. Collman, J. P.; Harford, S.T.; Franzen, S.;
Shreve, A. P.; Woodruff, W.H.
“Resonance Raman and X-ray crystallographic
studies of intertriad metal-metal bonds. 2. WRu and MoOs porphyrin dimers”
Inorg. Chem., 1999, 38, 2093-2097
28. Das,
T.K.; Franzen, S.; Pond, A.; Dawson, J. H.; Rousseau, D. L. “Formation of a
five-coordinate hydroxide-bound heme in the His93Gly mutant of sperm whale
myoglobin” Inorg. Chem. 1999, 38, 1952-1953
29.
Shreve, A. P.; Franzen, S.; Simpson, M. C.; Dyer, R. B. "Dependence of NO recombination dynamics
in horse myoglobin on solution glycerol content" J. Phys. Chem. B, 1999,
103, 7969-7975
30.
Decatur, S. M.; Belcher, K.L.; Rickert, P. K.; Franzen, S.; Boxer S. G. "Hydrogen bonding modulates binding of
exogenous ligands in a myoglobin proximal cavity mutant" Biochemistry, 1999,
38, 11086-11092
31. Pond,
A. E.; Roach, M. P.; Sono, M.; Rux, A. H.; Franzen, S.; Hu, R.; Thomas, M. R.;
Wilks, A.; Dou, Y.; Ikeda-Saito, M.; de Montelano, P. R. O; Woodruff, W.H.;
Boxer, S. G. Dawson JH "Assignment of the heme axial ligand(s) for the
ferric myoglobin (H93G) and heme oxygenase (H25A) cavity mutants as oxygen
donors using magnetic circular dichroism" Biochemistry, 1999, 38,
7601-7608
32. Franzen, S.;
Steven G. Boxer,; R. Brian Dyer,; William H. Woodruff “Resonance Raman Studies of Heme-Axial
Ligation in H93G Myoglobin” J. Phys. Chem. B, 2000, 104, 10359-10367
33. Sauthier,
M. L.; Carroll, R. L.; McConnell, W. P.; Feldheim, D. L.; Gorman, C. B.;
Franzen, S. “Single Electron Tunneling in Gold Nanoparticles Immobilized by
DNA Hybridization” Langmuir, 2002, 18, 1825-1830
34. Franzen,
S.; Kiger, L.; Poyart, C.; Martin, J. L. "Heme photolysis occurs by
ultrafast excited state metal-to-ring charge transfer" Biophys. J., 2001,
80, 2372 - 2385
35.
Franzen, S.; Miskowski, V. M.; Shreve, A. P.; Wallace-Williams, S. E.;
Woodruff, W. H.; Ondrias, M. R.; Barr, M. E.; Moore, L.; Boxer S. G. “Electrostatic and Conformational Effects on
the Electronic Structures of Distortional Isomers of a Mixed-Valence Binuclear
Cu Complex”, Inorg. Chem. 2001, 40, 6375-6382
36.
Franzen, S.; Bailey, J.; Dyer, R. B.; Woodruff, W. H.; Hu, R. B.;
Thomas, M. R.; Boxer, S. G. “A Photolysis-Triggered Heme Ligand Switch in
H93G Myoglobin” Biochemistry, 2001, 40, 5299 – 5305
37. Franzen,
S. “The Effect of a Charge Relay on the Vibrational Frequencies of
Carbonmonoxy Iron Porphine Adducts” J. Am. Chem. Soc., 2001, 123, 12578-12589.
38. Thomas, M. R.; Brown, D.; Franzen, S.;
Boxer, S. G. “FTIR and Resonance Raman Studies of Nitric Oxide
Binding to H93G Cavity Mutants of Myoglobin” Biochemistry, 2001, 40, 15047-15056
39.
Pop, C.; Chen, Y.-R.; Smith, B.; Bose, K.; Bobay, B.; Tripathy, A.; Franzen,
S.; Clark, A. C. “Removal of the Pro-domain Has Little Effect on the
Procaspase-3 Dimer” Biochemistry, 2001, 40, 14224-14235
40. Novak,
J. P.; Knickerson, C.; Franzen, S.; Feldheim, D. L. “Purification of
Molecularly Bridged Metal Nanoparticle Arrays by Centrifugation and
Size-exclusion chromatography” Anal. Chem. 2001, 73, 5758-5761
41. Franzen,
S.; Stanley, R. J. “A Theoretical Explanation for Quantum Yield Failure in
Bacterial Photosynthetic Reaction Centers” Chemical Physics, 2002, 276, 115-127
42. Franzen,
S.; Wallace-Williams, S. E.; Shreve A. P. “The heme charge transfer band
III is vibronically coupled to the Soret band” J. Am. Chem. Soc., 2002,
124, 7146-7155
43. Brewer,
S. H.; Franzen, S. “Optical properties of indium tin oxide and
fluorine-doped tin oxide surfaces: correlation of plasmon frequency,
reflectivity and skin depth with conductivity” Alloys and Compounds, 2002,
338, 73-79
44.
Franzen, S. “Carbonmonoxy Rebinding Kinetics in H93G Myoglobin: Geminate
CO recombination depends on proximal ligation states and ligand escape does
not” J. Phys. Chem., 2002, 106, 4533-4542
45.
Brewer, S. H.; Lappi, S.; Anthireya, S.; Drapcho, D.; Franzen, S. “Detection
of DNA Hybridization on Gold Surfaces by Polarization Modulation Infrared
Reflection Absorption Spectroscopy” Langmuir, 2002, 18, 4460-4464
46.
Brewer, S. H.; Brown, D. A.; Franzen, S. “Formation of thiolate and
phosphonate adlayers on indium tin oxide: Optical and electronic
characterization of the bonding” Langmuir, 2002, 18, 6857-6865
47.
Franzen, S., Folmer, J. W.C.; Glomm, W.R.; O'Neal, R. “Optical
properties of dye molecules adsorbed on single gold and silver nanoparticles”
J. Phys. Chem. 2002, 106, 6533-6540
48.
Smith, B. M.; Franzen, S. “Single-Pass Attenuated Total Reflection Fourier
Transform Infrared Spectroscopy for the Analysis of Proteins in H2O
Solution” Anal. Chem. 2002, 74, 4076-4080
49.
Smith, B. M.; Franzen, S. “Single-Pass Attenuated Total Reflection Fourier
Transform Infrared Spectroscopy for the Prediction of Secondary Structure”
Anal. Chem. 2002, 74, 3386-3391
50.Franzen
S. “A Perimeter Model for the Magnetic Circular Dichroism Spectrum of Deoxy
Ferrous Heme in Myoglobin” J. Phys. Chem. B 2002, 106, 10482-10491
51.
Franzen, S.; Brown, D. A.; Petersen, E.; Friedman, J.; Thomas, M. R.; Boxer,
S. G. “Proximal Ligand Motions in H93G Myoglobin” Eur. J. Biochem. 2002,
269, 4879-4886
52.
Franzen, S.; “An electrostatic
model for the frequency shifts in the carbonmonoxy stretching band of
myoglobin: correlation of hydrogen bonding and the Stark tuning rate” J. Am.
Chem. Soc. 2002, 124, 13271-13281
53. Franzen,
S.; Fritsch, K.; Brewer, S. “Experimental
observation of anharmonic coupling of the heme-doming and iron-ligand
out-of-plane vibrational modes confirmed by Density Functional Theory” J. Phys.
Chem. B 2002, 106, 11641-11646
54.
Franzen, S.; “Spin-dependent
mechanism for diatomic ligand binding to heme” Proc. Natl. Acad. Sci. 2002, 99,
16754-16759
55.
Brewer, S. H.; Franzen, S. “Observation of the plasmon band in indium
tin oxide thin films by reflectance FTIR spectroscopy” J. Phys. Chem. B 2002,
106, 12986-12992
56.
Lappi, S. E.; Collier, W.; Franzen, S. “Density functional analysis of anharmonic contributions to adenine
matrix isolation spectra” J. Phys. Chem.
B 2002, 106, 11446-11455
57.
Tkachencko, A.; Coleman, D.; Xie, H.; Ryan, J.; Andersen, M.; Glomm, W. R.;
Franzen, S.; Feldheim, D. L, “Multifunctional Nanoparticle-Peptide Complexes for Nuclear Targeting” J. Am. Chem. Soc. 2003, 125, 4700-4701
58. Franzen, S.; Folmer, J. W. C. “Modulated Differential
Scanning Calorimetry in the undergraduate Physical Chemistry laboratory.” J. Chem. Ed. 2003, 80, 813-818
59. Brewer, S. H., Franzen, S. "On the mechanism of the vibrational
Stark effect." J. Chem. Phys.
2003, 119, 851-858
60. Maness, S,; Gibbs, A.; Dyer, R. B.; Franzen S. "Nanosecond
Measurements of Early Events in the Cyclic Beta-sheet Structures" Biophys. J. 2003, 84, 3874-3882
61.
Franzen, S.; Shultz, D. A. "A New Paradigm for Design of High-Spin Organic Molecules: The
Mechanism of Spin-dependent Delocalization in Exchange-Coupled Mixed-Valent
Organic Species" J. Phys. Chem. A 2003, 107, 4292-4299
62.
Franzen, S."Use of Periodic Boundary Conditions to Calculate Accurate
Beta-Sheet Frequencies Using Density Function Theory" J. Phys. Chem. A
2003, 107, 9898-9902
63.
Franzen, S.; Ni, W.; Wang, B. "A Study of the Mechanism of Electron
Transfer Quenching by Boron-Nitrogen Adducts in Fluorescent Sensors"J.
Phys. Chem. B, 2003, 107, 12942-12948
64.
Franzen, S."Density functional calculation of a potential energy surface
alkane thiols on Au(111) as function of alkane chain length" Chem. Phys.
Lett., 2003, 381, 315-321
65.
Xie, H.; Tkachenko, A. G.; Glomm, W. R.; Ryan, J. A.; Brennaman, M. K.;
Papanikolas, J.; Franzen, S.; Feldheim, D. L. "Critical flocculation
concentrations, binding isotherms, and ligand exchange properties of
peptide-modified gold nanoparticles studied by UV-visible, fluorescence, and
time-correlated single photon counting spectroscopies" Anal. Chem. 2003,
75, 5797-5805
66.
Lowe, L. B.; Brewer, S. H.; Kraemer, S.; Fuierer R. R.; Qian G.; Agbasi-Porter,
C. O.; Moses, S.; Franzen, S.; Feldheim, D. L.
67.
Brewer, S. H.; Franzen, S. "Calculation of the Optical and Electronic
Properties of Indium Tin Oxide by Density Functional Theory" Chem. Phys.
2004, 300, 285-293
68.
Shapkina, T.; Lappi, S.; Franzen, S.; Wollenzien, P. "Efficiency and
pattern of UV pulse laser-induced RNA-RNA cross-linking in the ribosome"
Nucl. Acids Res. 2004, 32, 1518-1526
69. Lappi, S. E.; Franzen, S.
"Eigenvector mapping: a method for discerning solvent effects on
vibrational spectra" Spectrochim. Acta A, 2004, 60, 357-370
70. Smith, B. M.; Lappi, S. E.; Dembowy, S.;
Belyea, J.; Brewer, S.H.; Franzen, S. "Surface Modification of a Germanium
Attenuated TOtal Reflectance Elements" Langmuir 2004, 20, 1184-1188
71.
Polack, T.; Ogilvie, J.; Franzen, S.; Vos, M. H.; Joffre, M.; Martin, J.-L.;
Alexandrou, A. "The CO vibration as a probe of ligand dissociation and
transfer in myoglobin" Phys. Rev. 2004, 93, Art. No. 018102
72. Brewer, S.H.; Allen, A. M.; Lappi, S. E.;
Chasse, T. L.; Briggman, K. A.; Gorman, C.; Franzen, S. "Infrared
Detection of Phenylboronic Acid Terminated Alkane Thiol Monolayers on Gold
Surfaces" Langmuir 2004, 20, 5512-5520
73. Lappi, S. E.; Smith, B.; Franzen, S.
"Infrared spectra of H216O, H218O
and D2O in the liquid phase by single-pass attenuated total internal
reflection spectroscopy" Spectrochim. Acta A 2004, 60, 2611-2619
74. Moses, S.; Brewer, S. H.; Lappi, S. E.;
Gilvey, L. B. G.; Sauthier, M.; Tenent, R. C.; Feldheim, D. L.; Franzen, S.
"Characterization of Single and Double Stranded DNA on Gold Surfaces"
Langmuir 2004, 20, 11134-11140
75.
Dyer R.B.; Maness S.J.; Peterson E.S.; Franzen, S.; Fesinmeyer, R.M.; Andersen
N.H. "The mechanism of beta-hairpin formation " Biochemistry 2004,
43, 11560-11566
76.
Ni, W.J.; Kaur, G.; Springsteen, G.; Wang, B.H.; Franzen, S. "Regulating
the fluorescence intensity of an anthracene boronic acid system: a B-N bond or
a hydrolysis mechanism?" Bioorganic Chemistry, 2004, 32, 571-581
77. Tkachenko, A.; Xie, H.; Coleman, D.;
Ryan, J.; Anderson, M.; Glomm, W.; Belyea, J.; Franzen, S.; Feldheim, D. L.
"Cellular Trajectories of Peptide-modified Gold Particle Complexes:
Comparison of Nuclear Localization Signals" Bioconjugate Chemistry 2004,
15, 482
78. Hung, F. R.; Franzen, S.;
Gubbins, K. E. "A graduate course in multi-scale modeling of soft
matter" J. Chem. Eng. Ed. 2004, 38, 242-249
79.
Nienhaus, K.; Olson, J. S.; Franzen, S.; Nienhaus, G. U. "The Origin of
Stark Splitting in the initial photodissociated state of MbCO" J. Am.
Chem. Soc. 2005, 127, 40-41
80.
Glomm, W. R.; Moses, S.; Brennaman, M. K.; Papanikolas, J.; Franzen, S.
"Detection of surface adsorption of Ru(II) and Os(II) Polypyridyl
Complexes on Gold and Silver Nanoparticles by Single Photon Counting Emission
Measurements" J. Phys. Chem. B 2005, 109, 804-810
81. Nienhaus,
K.; Olson, J.S.; Franzen, S.; Nienhaus, G.U. "The origin of Stark
splitting in the initial photodissociated state of MbCO" J. Am. Chem.
Soc., 2005, 127, 40-41
82.
Masternak, A.; Wenska, G.; Milecki, J.; Skalski, B.; Franzen, S.
"Solvatochromism of a Novel Betaine Derived from Purine" J. Phys.
Chem. A 2005, 109, 759-766
83.
Bin-Salamon, S.; Brewer, S. H.; Franzen, S.; Feldheim, D. L., Lappi, S.;
Shultz, D. A. "Supramolecule control of valence-tautomeric equlibrium on
nanometer-scale gold clusters" J. Am. Chem. Soc. 2005 127, 5328-5329
84.
Dyer, R.B; Maness, S.J.; Franzen, S.; Fesinmeyer, R.M.; Olsen, K.A.; Andersen,
N.H. "Hairpin folding dynamics: The cold-denatured state is predisposed
for rapid folding" Biochemistry 2005, 30, 10406-10415
85.
Brewer, S.H.; Wicaksana, D.; Maria, J.-P.; Kingon A. I.; Franzen, S.
"Investigation of the Electrical and Optical Properties of Iridium Oxide
by Reflectance FTIR Spectroscopy and Density Functional Theory Calculations"
Chemical Physics, 2005, 313, 25-31
86.
Brewer, S.H.; Glomm, W.R.; Johnson, M.C.; Knag, M. K.; Franzen, S.
"Probing BSA Binding to Citrate Coated Gold Nanoparticles and
Surfaces" Langmuir, 2005, 21, 9303-9307
87.
Brewer, S.H.; Vu, D.M.; Tang, T.; Franzen, S.; Raleigh, D.P.; Dyer, R. B.
"Effect of modulating unfolded state structure on the folding kinetics of
the villin headpiece subdomain" Proc. Natl. Acad. Sci., 2005, 102,
16662-16667
88. Belyea, J.; Gilvey, L. Godek, M.; Sit,
T.; Lommel, S.; Franzen, S. "Cloning, expression, purification and
functional tests of a histidine-tagged dehaloperoxidase enzyme from Amphitrite
ornata" Biochemistry 2005, 44, 15637-15644
89. Tkachenko, A.; Xie, H.; Franzen, S.;
Feldheim, D.L. "Assembly and characterization of biomoledule-gold
nanoparticle conjugates and their use in intracellular imaging" in Methods
of Molecular Biology (Totowa, NJ, U.S.), 2005, 303, 85-99
90.
Negrerie, M.; Kruglik, S.G.; Lambry, J.C.; Vos, M.H.; Martin, J.L.; Franzen,
S.; "Role of heme iron coordination and protein structure in the dynamics
and geminate rebinding of nitric oxide to the H93G myoglobin mutant -
Implications for nitric oxide sensors" J. Biol. Chem. 2006, 281,
10389-10398
91.
Loo, L.; Guenther, R. H.; Basnayake, V.R.; Lommel, S.A.; Franzen S.
"Controlled encapsidation of gold nanoparticles by a viral protein
shell" J. Am. Chem. Soc., 2006, 128, 4502-4503
92.
Cerruti, M.; Sauthier, N.; Leonard, D.; Liu, D.; Duscher, G.; Franzen, S.;
Feldheim, D.; "Gold and Silica-Coated Gold Nanoparticles as Thermographic
Labels for DNA Detection"Anal. Chem. 2006, 78, 3282-3288
93.
Bin-Salamon, S.; Brewer, S.H.; Depperman E,C,; Franzen, S.; Kampf , J.W.; Kirk,
M.L.; Kumar, R.K.; Lappi, S.; Peariso, K.; Preuss, K.E.; Shultz, D.A.
"Testing bridge-mediated differences in dinuclear valence tautomeric
behavior" Inorg. Chem. 2006, 45, 4461-4467
94.
Nienhaus, K.; Deng, P.; J. Belyea, J.; Franzen, S.; Nienhaus, U.
"Spectroscopic Study of Substrate Binding to the Carbonmonoxy Form of
Dehaloperoxidase from Amphitrite ornata " J. Phys. Chem. B 2006, 110,
13264-13276
95.
Franzen, S.; Jasaitis, A.; Belyea, J.; Brewer, S. H.; Casey, R.; MacFarlane IV,
A. W.; Stanley, R.; Vos, M. H.; Martin, J.-L. "NO-heme Geminate
Recombination Dynamics in Dehaloperoxidase" J. Phys. Chem. B 2006, 45,
9085-9094
96. Franzen, S.; Belya, J.; Davis, M. F.;
Gilvey, L.B.; Chaudhary, C.; Sit, T. L.: Lommel, S. A. "Proximal cavity,
distal histidine and substrate hydrogen-bonding mutations modulate the activity
of Amphitrite ornata dehaloperoxidase" Biochemistry, 2006, 45, 9085-9095
97.
Rhodes C.; Franzen, S.; Maria, J-P.; Losego, M.; Leonard, D. N. ; Laughlin, B.
; Duscher G.; Weibel, S.; "Surface Plasmon Resonance in Conducting Metal
Oxides" J. Appl. Phys. 2006, 100, Art. No. 054905
98.
Agbasi-Porter C..; Ryman-Rasmussen, J.; Franzen, S.; Feldheim, D.L.
"Transcription inhibition using oligonucleotide-modified gold
nanoparticles" Bioconj. Chem. 2006, 17, 1178-1183
99.
Belyea, J.; Belyea, C.M.; Lappi, S.E.; Franzen, S. "Resonance Raman study
of ferric heme adducts of dehaloperoxidase from Amphitrite ornata"
Biochemistry 2006, 45, 14275-14284
100.
Franzen, S.; Gilvey, L.B.; Belyea, J. "The pH dependence of the activity
of dehaloperoxidase from Amphitrite ornata" Biochimica et Biophysica Acta:
Protein Structure and Molecular Enzymology 2007, 1774, 121-130
101.
Kaufman, E.D.; Belyea, J.; Johnson, M.C.; Nicholson, Z.M.; Ricks, J.L.; Shah,
P.K.; Bayless, M.; Pettersson, T.; Feldoto, Z.; Blomberg, E.; Claesson, P.
"Probing protein adsorption onto mercaptoundecanoic acid stabilized gold
nanoparticles and surfaces by quartz crystal microbalance and zeta-potential
measurements." Langmuir 2007, 23, 6053-6062
102.
Liu, Y.L.; Shipton, M.K.; Ryan, J.; Kaufman, E.D.; Franzen, S.; Feldheim, D.L.
"Synthesis, stability, and cellular internalization of gold nanoparticles
containing mixed peptide-poly(ethylene glycol) monolayers". Analytical
Chemistry 2007, 79, 2221-2229
103.
Serrano, V.S.; Chen, Z.; Davis, M. F.; Franzen, S. "X-ray Crystal
Structural Analysis of the Binding Site in the Ferric and Oxyferrous Forms of
the Recombinant Heme Dehaloperoxidase Cloned from Amphitrite ornata" Acta
Cryst. D 2007, 63, 1094-1101
104. Moses, S.; Brewer, S.H.; Kraemer, S.;
Fuierer, R.R.; Lowe, L.B.; Agbasi, D.; Sauthier, M.; Franzen, S.
"Detection of DNA Hybridization on Indium Tin Oxide Surfaces" Sensors
and Actuators B, 2007, 125, 574-580
105.
V.S. Serrano; Liu, W.; Franzen, S. "An Infrared Spectroscopic Study of the
Conformational Transition of Elastin-like Polypeptides" Biophys. J. 2007,
93, 2427-2435
106.
Loo, L.; Guenther, R. N.; Lommel, S. A.; Franzen, S. "Encapsidation of
nanoparticles by Red clover necrotic mosaic virus" J. Am. Chem. Soc. 2007,
93, 2427-2435
107.
Cerruti, M.; Rhodes, C,; Losego, M; Efremenko, A.; Maria, J.-P.; Fischer, D.;
Franzen, S.; Genzer, J. "Influence of indium-tin oxide surface structure
on the ordering and coverage of carboxylic acid and thiol monolayers " J.
Phys. D. - Appl. Phys. 2007, 40, 4212-4221
108.
Franzen S.; Cerruti, M.; Leonard, D.; Duscher, G. “The Role of Selection
Pressure in RNA-mediated Evolutionary Materials Synthesis” J. Am. Chem. Soc.
2007, 129, 15340-15346
109.
Ryan, J. A.; Overton, K.W.; Speight, M.E.; Oldenburg, C.N.; Loo, L.; Robarge,
W.; Franzen, S.; Feldheim, D. L. “Cellular Uptake of Gold Nanoparticles
Passivated with BSA-SV40 Large T Antigen Conjugates” Anal. Chem. 2007, 79,
9150-9155
110.
Rhodes, C.L.; Lappi, S.; Fischer, D.; Sambasivan, S.; Franzen, S.; Jan Genzer,
J. “Characterization of Monolayer Formation on Aluminum-doped Zinc Oxide Thin
Films” Langmuir, 2008, 24, 433-441
111.
Loo, L.; Guenther, R. H.; Lommel, S. A.; Franzen, S. “Infusion of dye molecules
into Red clover necrotic mosaic virus” Chem. Comm. 2008, 1, 88-90i
112.
Franzen, S. “Surface Plasmon Polaritons and Plasma Absorption in Indium Tin
Oxide Compared to Silver and Gold” J. Phys. Chem. C 2008, 112, 6027-6032
113.
Rhodes, C.L. ; Brewer, S.H. ; Folmer J.; Franzen, S. “Investigation of
hexadecanethiol self-assembled monolayers on cadmium tin oxide thin films” Thin
Solid Films, 2008, 516, 1838-1842
114.
Rhodes, C.L. ; Cerruti, M. ; Efremenko, A. ; Losego, M. ; Aspnes, D.E. ; Maria,
J.-P.; Franzen, S. “Dependence of Plasmon Polaritons on the Thickness of Indium
Tin Oxide Thin Films” J. Appl. Phys. 2008, 103, Art. No. 093108
115.
Smirnova, T.I., Weber, R.T., Davis, M.F., Franzen, S. “Substrate binding
triggers a switch in the iron coordination in dehaloperoxidase from Amphitrite
ornata: HYSCORE experiments” J. Am. Chem. Soc. 2008, 130, 2128-2129
116. Leonard, D.; Cerruti, M.; Duscher, G.;
Franzen S. “Interfacial
and Solvent Effects Govern the Formation of Pd2(DBA)3 Microstructures” Langmuir, 2008, 24, 433-440
117. Liu, Y.L.; Franzen, S.; “Factors determining the
efficacy of nuclear delivery of antisense oligonucleotides by gold
nanoparticles”. Bioconjugate Chemistry,
2008, 19,
1009-1016
118. Miksovska J.; Horsa, S.; Davis
M.F.; Franzen, S. “Conformational
Dynamics Associated with CO Photodissociation from Dehaloperoxidase Studied
using Photoacoustic Calorimetry” Biochemistry,
2008, 47,
11510-11517
119. Nienhaus, K.; Nickel, E.;
Davis, M.F.; Franzen, S.; Nienhaus, G.U. "Determinants of substrate internalization in
the distal pocket of dehaloperoxidase hemoglobin of Amphitrite ornata" Biochemistry, 2008, 47, 12985-12994
120. Feducia, J.; Dumarieh, R.;
Gilvey, L.B.G.; Smirnova, T.; Franzen, S.; Ghiladi, R.A. “Characterization of
Dehaloperoxidase Compound ES and its Reactivity with Trihalophenols” Biochemistry, 2009, 48, 995-1005
121. Chen, Z.; de Serrano, V.S.; Betts,
L.; Franzen, S. “Distal
Histidine Conformational Flexibility in Dehaloperoxidase from Amphitrite
ornata” Acta Cryst. D 2009, 65, 34-40
122. Davis, M.F.; Gracz, H.;
Vendeix, F.A.P.; Gilvey, L.B.; Somasundaram, A.; Decatur, S.M.; Franzen, S.
“Internal Structural Changes Induced by the Binding of Substrates to the
Hemoglobin Dehaloperoxidase from Amphitrite ornata” Biochemistry, 2009, 48,
2164-2172
123. Gaff, J.F.; Franzen S. "First
Principles Calculation of the Absolute Resonance Raman Cross Sections of the
Aromatic Amino Acids ” J. Phys. Chem. A, 2009, 113, 5414-5422
124. Franzen S. “Intrinsic Limitations on the
|E|4 Enhancement Factor in Surface Enhanced Raman Scattering” J. Phys. Chem.
2009, 113, 5912-5919
125. Gagnon, K.T.; Ju, S.Y.;
Goshe, M. B.; Maxwell, E. S.; Franzen S. A role for hydrophobicity in a DielsAlder
reaction catalyzed by pyridyl-modified RNA Nucl. Acids Res. 2009, 37, 3074-3082
126. Leonard, D.N.; Franzen, S. “Is
Pd2(DBA)3 a Feasible Precursor for the Synthesis of Pd Nanoparticles?” J. Phys.
Chem. C. 2009, 113, 12706-12714
127. Franzen, S.; Lommel, S.A.
"Targeting cancer with "smart bombs: equipping plant virus
nanoparticles for a seek and destroy mission" Nanomedicine, 2009, 4,
575-588
128. Losego, S.; Efremenko, A.; Rhodes, C.;
Cerruti, M.; Franzen, S.; Maria, J.-P. "Conductive Oxide Thin Films: Model
Systems for Understanding and Controlling Surface Plasmon Resonance" J.
Appl. Phys. 2009, 106, 024903
129. Franzen. S; Rhodes C.; Cerruti, M.;
Efremenko, A.Y.; Gerber, R.W.; Losego, M.; Maria, J.-P.; Aspnes D.;
"Equivalences between Gold and Indium Tin Oxide as Plasmonic
Materials" Opt. Lett., 2009, 34, 2867-2869
130.
Thompson, M.K.; Davis, M.F.; de Serrano, V.; Nicoletti, F.P.; Howes, B.D.;
Smulevich, G.; Franzen, S. :Two-site competitive inhibition in
dehaloperoxidase-hemoglobin" submitted
131.
Skalski,B.; Stankiewicz, K.; Taras-Goslinska, K.; Masternak, A.; Gdaniec, Z.;
Franzen, S. "Structure and Spectroscopic Analysis of the Fluorescent
Photoadducts formed between 5-Chloro- or 5-Fluoro-4-thiouridines and
Thymidine" J. Org. Chem. submitted
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